Basic Information
Locus ID:
BH05.446
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3707008 | 3709359 | - | BH05.446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 71,553.67 Da | 38.67 | 83.35 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 215 | 4.2E-17 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 348 | 416 | 7.9E-7 | IPR032838 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 537 | 603 | 2.4E-8 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 223 | 1.3E-22 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 226 | 2.1E-29 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 226 | 6.0E-14 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 229 | 15.606457 | IPR002035 |
| Coils | Coil | Coil | 518 | 545 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 6.49E-32 |
| RefSeq | XP_039798713.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 7.87E-214 |
| TrEMBL | A0A8T0U401 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054200 PE=4 SV=1 | 1.78E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology