Basic Information
Locus ID:
BH05.4297
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 49120539 | 49122958 | + | BH05.4297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 33,368.15 Da | 52.91 | 66.70 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 102 | 146 | 1.30398E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 103 | 149 | 6.7E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 151 | 2.23E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 159 | 3.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 104 | 144 | 8.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 104 | 145 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 119 | 128 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 5.11E-77 |
| RefSeq | XP_022681228.1 | E3 ubiquitin-protein ligase RNF5 isoform X1 [Setaria italica] | 3.04E-161 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 4.6E-30 | |
| TrEMBL | A0A4U6VJM6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_3G422700v2 PE=4 SV=1 | 2.79E-159 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology