Basic Information
Locus ID:
BH05.423
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Dehydrogenase E1 component
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3565293 | 3568392 | + | BH05.423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 54,235.26 Da | 45.30 | 75.14 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02000 | TPP_E1_PDC_ADC_BCADC | 151 | 443 | 1.06399E-144 | - |
| Pfam | PF00676 | Dehydrogenase E1 component | 154 | 450 | 4.2E-96 | IPR001017 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 121 | 485 | 2.23E-110 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 93 | 488 | 6.6E-146 | - |
Gene Ontology
KEGG Pathway
Pathway:
ko00280 (Valine, leucine and isoleucine degradation)
map00280 (Valine, leucine and isoleucine degradation)
ko00640 (Propanoate metabolism)
map00640 (Propanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Reaction:
R07599 (3-Methyl-2-oxobutanoic acid + Thiamin diphosphate <=> 2-Methyl-1-hydroxypropyl-ThPP + CO2)
R07600 (2-Methyl-1-hydroxypropyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylpropanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R07601 (4-Methyl-2-oxopentanoate + Thiamin diphosphate <=> 3-Methyl-1-hydroxybutyl-ThPP + CO2)
R07602 (3-Methyl-1-hydroxybutyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(3-methylbutanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R07603 ((S)-3-Methyl-2-oxopentanoic acid + Thiamin diphosphate <=> 2-Methyl-1-hydroxybutyl-ThPP + CO2)
R07604 (2-Methyl-1-hydroxybutyl-ThPP + Enzyme N6-(lipoyl)lysine <=> [Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] S-(2-methylbutanoyl)dihydrolipoyllysine + Thiamin diphosphate)
R10996 (2-Oxobutanoate + Thiamin diphosphate <=> 2-(alpha-Hydroxypropyl)thiamine diphosphate + CO2)
R10997 (2-(alpha-Hydroxypropyl)thiamine diphosphate + Enzyme N6-(lipoyl)lysine <=> Enzyme N6-(S-propyldihydrolipoyl)lysine + Thiamin diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G09300.2 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein. | 7.15E-221 |
| RefSeq | XP_004977194.1 | 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [Setaria italica] | 0 |
| Q84JL2 | 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g09300 PE=1 SV=1 | 2.23E-219 | |
| TrEMBL | A0A8T0U2E4 | E1_dh domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG072000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12031, jg39670 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_1049, gene_1050, gene_25247, gene_25248 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024221, Ah027113 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g010630, BVRB_6g132750 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13443, Sbi_jg28271, Sbi_jg51336, Sbi_jg52424 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg7185, Seu_jg9426 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013427, GOSA_00020145 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10450, Sgl15705, Sgl33760 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000394, gene:ENSEOMG00000002528 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0013520, CQ.Regalona.r1.1BG0012640 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30038720, pistato.v30201350 |
| Apiaceae | Apium graveolens | 2 | Ag3G01575, Ag7G02190 |
| Arecaceae | Cocos nucifera | 1 | scaffold011718G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720523 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.250.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G29069, Ftri12G03333, Ftri12G16755, Ftri16G12838 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21400.1, AT5G09300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007543m.g.v1.0, Thhalv10013452m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18950.v2.2, Sp6g34020.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g009170.2N, BniB04g036010.2N, BniB08g004020.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1899, Ceq06G1714, Ceq06G1909 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2046, Cgl06G1776, Cgl06G2004 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g08810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0451s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g13100, gene.Thate06g09680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12281 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.889, evm.TU.LG06.795 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014211, Pov_00023064 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00385, Lb1G07224, Lb7G34802 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.366, BH05.423, CH05.485 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0384000, gene-QOZ80_5BG0430850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0453670.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018697, gene-QYE76_018698, gene-QYE76_071976 |
| Poaceae | Oryza coarctata | 1 | Oco24G002740 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g08260.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G054000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703355 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G023530, Chr06G025360, Chr27G002860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G217500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG011010, gene_TRIDC5AG018220 |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G071500.1, TraesCS5A02G120000.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb409040_P006 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25493, nbis-gene-46230 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24847, Zma_g25581 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.2426, evm.TU.LG04.1525, evm.TU.LG10.1430 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc05g11060, gene.Posoc05g11070, gene.Posoc05g11100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.862, evm.TU.Scaffold_7_RagTag.1168 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-1052, nbisL1-mrna-18671, nbisL1-mrna-968 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11642, nbisL1-mrna-14612 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13154, nbisL1-mrna-6528 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.392, evm.TU.utg000019l.677 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011674, Maker00012748 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5142, nbisL1-mrna-8908 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18381, nbisL1-mrna-19690 |
| Salicaceae | Populus euphratica | 5 | populus_peu13663, populus_peu14810, populus_peu14815 ... |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132602416, gene-LOC132612561, gene-LOC132627204 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000220100, SOLCI002586800, SOLCI004458100 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107018340, gene-LOC107020571, gene-LOC107021536 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11070, gene_879 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2752, TC04G0380 |