Basic Information
Locus ID:
BH05.417
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3530597 | 3533772 | - | BH05.417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 106,719.08 Da | 37.96 | 102.19 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 432 | 489 | 1.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 211 | 267 | 1.3E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 671 | 958 | 1.5E-41 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 271 | 1.87E-30 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 287 | 543 | 2.52E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 662 | 959 | 1.37E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 752 | 975 | 7.3E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 272 | 4.0E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 273 | 569 | 2.8E-71 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 751 | 3.3E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 209 | 4.7E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 382 | 405 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 1.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 477 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 546 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 406 | 430 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 232 | 255 | 76.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 668 | 960 | 1.5E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 668 | 967 | 35.410629 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 113 | 134 | 7.958377 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 811 | 823 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 674 | 701 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 1.57E-101 |
| RefSeq | XP_039798584.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 [Panicum virgatum] | 2.62E-265 |
| C0LGX3 | LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana OX=3702 GN=HSL2 PE=1 SV=1 | 1.47E-65 | |
| TrEMBL | A0A8T0TZI2 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG073000 PE=4 SV=1 | 5.92E-264 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology