Basic Information
Locus ID:
BH05.4160
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 47638441 | 47640884 | + | BH05.4160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 72,849.95 Da | 31.21 | 89.15 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 262 | 299 | 4.34593E-5 | - |
| Pfam | PF00008 | EGF-like domain | 278 | 299 | 2.9E-5 | IPR000742 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 95 | 6.8E-11 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 389 | 656 | 3.8E-42 | IPR000719 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 279 | 312 | 9.13E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 371 | 656 | 9.98E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 465 | 659 | 4.9E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 357 | 464 | 1.1E-27 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 220 | 309 | 1.3E-10 | - |
| SMART | SM00179 | egfca_6 | 262 | 310 | 5.3E-5 | IPR001881 |
| SMART | SM00181 | egf_5 | 264 | 310 | 0.041 | IPR000742 |
| SMART | SM00220 | serkin_6 | 389 | 657 | 2.9E-32 | IPR000719 |
| SMART | SM00181 | egf_5 | 206 | 260 | 29.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 389 | 659 | 35.820515 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 510 | 522 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 395 | 418 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 1.2E-126 |
| RefSeq | XP_039840262.1 | wall-associated receptor kinase 1-like [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 1.16E-125 | |
| TrEMBL | A0A8T0UIH6 | Protein kinase domain-containing protein (Fragment) OS=Panicum virgatum OX=38727 GN=PVAP13_3NG280600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology