halophFGD

Basic Information

Locus ID: BH05.4152

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	47506629	47507834	+	BH05.4152

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.48	44,314.47 Da	52.12	89.25	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	24	59	1.7E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	22	59	9.03E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	17	63	1.9E-6	-
ProSiteProfiles	PS50181	F-box domain profile.	20	68	8.888098	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_002442530.1	uncharacterized protein LOC8084401 [Sorghum bicolor]	6.04E-170
TrEMBL	A0A811RA45	F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50206 PE=4 SV=1	1.3E-176

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH05.4050, AH05.4051, BH02.1064, BH05.4152, CH05.4370 ... CH05.4371, CH05.4378
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0397900, gene-QOZ80_5AG0397910 ... gene-QOZ80_5BG0446460, gene-QOZ80_5BG0446470
Poaceae	Sporobolus alterniflorus	6	Chr04G015920, Chr04G018650, Chr04G019030, Chr06G016670 ... Chr06G016680, Chr06G019430