Basic Information
Locus ID:
BH05.4120
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 47136503 | 47137732 | + | BH05.4120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 45,882.16 Da | 46.81 | 83.55 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 16 | 56 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 69 | 1.57E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 59 | 1.7E-5 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 3.8E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 9.073559 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034585161.1 | uncharacterized protein LOC117847966 [Setaria viridis] | 5.11E-242 |
| TrEMBL | A0A4U6VMK3 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G401800v2 PE=4 SV=1 | 1.16E-240 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.4119, BH05.4120 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0397660, gene-QOZ80_5AG0397810 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0647540.1.CDS1 |
| Poaceae | Oryza coarctata | 3 | Oco19G000590, Oco19G000610, Oco20G000640 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g04600.2, LOC_Os10g04610.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304287 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G391500, Tel7E01G168600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG027100, gene_TRIDC2BG031420 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G208500.1.cds1, TraesCS2B02G234900.1.cds1 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25320 |