Basic Information
Locus ID:
BH05.3935
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 44971076 | 44973940 | + | BH05.3935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 29,052.16 Da | 79.87 | 61.28 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 217 | 260 | 4.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 264 | 1.21E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 266 | 8.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 218 | 259 | 5.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 260 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 5.43E-9 |
| RefSeq | XP_039839962.1 | probable E3 ubiquitin-protein ligase RHY1A [Panicum virgatum] | 2.03E-134 |
| B0XQY0 | DSC E3 ubiquitin ligase complex subunit A OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=dscA PE=3 SV=1 | 7.89E-6 | |
| TrEMBL | A0A8T0V6W9 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG482200 PE=4 SV=1 | 4.59E-133 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3909, BH05.3935, CH05.4152 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395530, gene-QOZ80_5BG0443860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0439510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001362 |
| Poaceae | Oryza coarctata | 2 | Oco23G009380, Oco24G008940 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g39110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G118900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705446, Pt_Chr0705460 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G018460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G148900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG010980, gene_TRIDC5BG012780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G072600.1, TraesCS5B02G078400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30421 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26027 |