Basic Information
Locus ID:
BH05.38
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 379592 | 388268 | + | BH05.38 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 164,765.30 Da | 59.99 | 72.53 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 121 | 150 | 2.5E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 166 | 1.11E-10 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 769 | 810 | 1.38E-6 | IPR036875 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 168 | 5.1E-13 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 734 | 813 | 7.5E-8 | - |
| SMART | SM00343 | c2hcfinal6 | 774 | 790 | 0.032 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 793 | 809 | 0.1 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 794 | 809 | 9.207683 | IPR001878 |
| PRINTS | PR01217 | Proline rich extensin signature | 612 | 624 | 1.2E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 632 | 648 | 1.2E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 813 | 838 | 1.2E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 833 | - | - |
| Coils | Coil | Coil | 1293 | 1313 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01880.1 | RING/U-box superfamily protein. | 5.8E-16 |
| RefSeq | XP_004978530.1 | uncharacterized protein LOC101755637 [Setaria italica] | 3.67E-215 |
| Q9LZV8 | RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1 | 5.62E-15 | |
| TrEMBL | A0A5J9TNF1 | DUF295 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_46548 PE=4 SV=1 | 2.3E-220 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology