Basic Information
Locus ID:
BH05.3788
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 43380932 | 43383287 | - | BH05.3788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 55,664.07 Da | 76.42 | 49.49 | -1.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 375 | 456 | 3.2E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 375 | 457 | 1.2E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 427 | - | - |
| Coils | Coil | Coil | 406 | 432 | - | - |
| Coils | Coil | Coil | 381 | 401 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 6.62E-54 |
| RefSeq | XP_025808696.1 | DNA ligase 1-like [Panicum hallii] | 8.36E-250 |
| TrEMBL | A0A2T8KLP8 | PAPA-1 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G461000 PE=4 SV=1 | 1.89E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology