Basic Information
Locus ID:
BH05.378
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
GDP-fucose protein O-fucosyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3131215 | 3144817 | + | BH05.378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 293,970.97 Da | 44.53 | 76.07 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11299 | O-FucT_plant | 154 | 489 | 6.75422E-144 | IPR024709 |
| CDD | cd09279 | RNase_HI_like | 2006 | 2130 | 3.41613E-48 | - |
| CDD | cd00303 | retropepsin_like | 1481 | 1548 | 1.94555E-6 | - |
| CDD | cd01647 | RT_LTR | 1662 | 1840 | 1.12308E-76 | - |
| Pfam | PF00665 | Integrase core domain | 2277 | 2373 | 8.5E-14 | IPR001584 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1905 | 1976 | 6.3E-15 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1680 | 1838 | 6.5E-20 | IPR000477 |
| Pfam | PF17921 | Integrase zinc binding domain | 2203 | 2258 | 1.9E-9 | IPR041588 |
| Pfam | PF10250 | GDP-fucose protein O-fucosyltransferase | 154 | 484 | 3.2E-73 | IPR019378 |
| Pfam | PF13456 | Reverse transcriptase-like | 2010 | 2129 | 2.2E-21 | IPR002156 |
| Pfam | PF03732 | Retrotransposon gag protein | 900 | 992 | 2.5E-7 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1620 | 1977 | 1.25E-108 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2005 | 2127 | 2.53E-24 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2274 | 2431 | 9.61E-41 | IPR012337 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1621 | 1765 | 4.2E-60 | - |
| Gene3D | G3DSA:3.10.20.370 | - | 1933 | 1981 | 7.8E-6 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1851 | 1932 | 1.8E-20 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1458 | 1554 | 5.9E-7 | IPR021109 |
| Gene3D | G3DSA:1.10.340.70 | - | 2167 | 2258 | 1.8E-14 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2269 | 2462 | 1.2E-51 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 2007 | 2141 | 1.8E-30 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1703 | 1840 | 4.2E-60 | IPR043128 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 2002 | 2131 | 15.293345 | IPR002156 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 2273 | 2433 | 24.134192 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 740 | - | - |
| Coils | Coil | Coil | 1244 | 1286 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35510.1 | O-fucosyltransferase family protein. | 8.47E-195 |
| RefSeq | XP_050222931.1 | uncharacterized protein LOC126673022 [Mercurialis annua] | 0 |
| Q8H1E6 | O-fucosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=OFUT9 PE=2 SV=1 | 8.13E-194 | |
| TrEMBL | A0A5B6U2I9 | Reverse transcriptase (RNA-dependent DNA polymerase) domain containing protein OS=Gossypium australe OX=47621 GN=EPI10_034343 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||