Basic Information
Locus ID:
BH05.3682
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 41822450 | 41827719 | + | BH05.3682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 61,438.11 Da | 56.37 | 69.38 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 288 | 331 | 2.5E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 336 | 383 | 1.2E-15 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 158 | 234 | 1.9E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 225 | 282 | 3.79E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 154 | 223 | 8.5E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 335 | 3.53E-11 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 360 | 384 | 1.5E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 355 | 2.9E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 289 | 331 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 151 | 222 | 24.965153 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 289 | 332 | 11.913911 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 224 | 288 | 34.905949 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 84 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 7.57E-97 |
| RefSeq | XP_025804804.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 [Panicum hallii] | 8.72E-161 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 7.28E-96 | |
| TrEMBL | A0A8T0UF38 | E3 ubiquitin-protein ligase MIEL1 OS=Panicum virgatum OX=38727 GN=PVAP13_3NG186900 PE=4 SV=1 | 3.68E-162 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology