Basic Information
Locus ID:
BH05.3575
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 40661578 | 40664945 | - | BH05.3575 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 91,338.24 Da | 39.23 | 81.17 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 659 | 780 | 2.31747E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 660 | 790 | 3.8E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 646 | 794 | 2.12E-35 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 620 | 810 | 3.3E-58 | IPR016135 |
| SMART | SM00212 | ubc_7 | 659 | 810 | 8.0E-21 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 656 | 815 | 31.793343 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 542 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 1.99E-83 |
| RefSeq | XP_034586741.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 4.47E-241 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 1.96E-82 | |
| TrEMBL | A0A1E5VGN7 | Putative ubiquitin-conjugating enzyme E2 24 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |