Basic Information
Locus ID:
BH05.3516
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 39622198 | 39625654 | + | BH05.3516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 103,782.35 Da | 49.23 | 80.24 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 698 | 820 | 6.03637E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 700 | 836 | 3.5E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 682 | 863 | 6.67E-38 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 660 | 914 | 3.7E-76 | IPR016135 |
| SMART | SM00212 | ubc_7 | 699 | 856 | 6.2E-18 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 696 | 856 | 34.488167 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 398 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 1.24E-151 |
| RefSeq | XP_034586741.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 0 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 1.21E-150 | |
| TrEMBL | A0A4U6VGF6 | UBC core domain-containing protein (Fragment) OS=Setaria viridis OX=4556 GN=SEVIR_3G343400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH05.3516 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr04G019680, Chr06G008110, Chr06G020560, Chr19G008590 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS2D02G051900.1, TraesCSU02G013600.1 |