Basic Information
Locus ID:
BH05.3500
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 39171305 | 39183091 | + | BH05.3500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 129,672.05 Da | 43.12 | 77.94 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 185 | 513 | 6.91557E-167 | - |
| CDD | cd00121 | MATH | 44 | 160 | 1.16434E-36 | IPR002083 |
| Pfam | PF00917 | MATH domain | 49 | 169 | 9.4E-21 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 187 | 508 | 1.8E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 612 | 864 | 1.2E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 874 | 1083 | 1.3E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 182 | 538 | 3.34E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 40 | 175 | 1.64E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 672 | 789 | 7.0E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 790 | 887 | 7.6E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 184 | 512 | 7.9E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 40 | 183 | 2.6E-53 | IPR008974 |
| SMART | SM00061 | math_3 | 44 | 148 | 2.9E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 187 | 511 | 39.774246 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 42 | 167 | 38.74984 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 188 | 203 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 427 | 444 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 43 | - | - |
| Coils | Coil | Coil | 527 | 547 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039839439.1 | ubiquitin C-terminal hydrolase 12-like isoform X1 [Panicum virgatum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0UYQ1 | ubiquitinyl hydrolase 1 OS=Panicum virgatum OX=38727 GN=PVAP13_3KG431800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology