halophFGD

Basic Information

Locus ID: BH05.3292

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Copine

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	35319868	35326097	-	BH05.3292

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.37	59,696.66 Da	59.25	76.11	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16729	RING-HC_RGLG_plant	506	546	7.6247E-21	-
Pfam	PF07002	Copine	223	437	1.8E-73	IPR010734
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	505	545	8.4E-10	-
SUPERFAMILY	SSF53300	vWA-like	199	382	8.53E-12	IPR036465
SUPERFAMILY	SSF57850	RING/U-box	500	547	1.32E-6	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	489	549	1.6E-11	IPR013083
SMART	SM00327	VWA_4	198	401	2.6E-7	IPR002035
SMART	SM00184	ring_2	507	539	0.0061	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	507	540	10.881201	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	466	497	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	479	497	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	39	79	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	94	150	-	-

KEGG Pathway

KO Term:

K16280 (E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G14420.1	RING domain ligase2.	7.82E-185
RefSeq	XP_039801757.1	E3 ubiquitin-protein ligase RGLG2-like [Panicum virgatum]	3.08E-309
Swiss-Prot	Q9LY87	E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1	7.5E-184
TrEMBL	A0A8T0UEB0	RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3NG089900 PE=4 SV=1	6.97E-308

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg18806, jg19870, jg20521, jg20545, jg21730, jg25951, jg5533 ... jg39682, jg40407, jg7000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11861, gene_17478
Amaranthaceae	Atriplex hortensis	3	Ah005418, Ah012182, Ah013763
Amaranthaceae	Beta vulgaris	3	BVRB_4g079000, BVRB_6g145130, BVRB_6g147210
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg17649, Sbi_jg17650, Sbi_jg42024, Sbi_jg42800 ... Sbi_jg45424, Sbi_jg48084, Sbi_jg62330
Amaranthaceae	Salicornia europaea	3	Seu_jg11282, Seu_jg27443, Seu_jg900
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002518, GOSA_00007328, GOSA_00019428
Amaranthaceae	Suaeda glauca	7	Sgl24032, Sgl29214, Sgl31681, Sgl35178, Sgl36987, Sgl37280 ... Sgl40557
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000001716, gene:ENSEOMG00000003568 ... gene:ENSEOMG00000011302, gene:ENSEOMG00000012327, gene:ENSEOMG00000024942, gene:ENSEOMG00000026436, gene:ENSEOMG00000027130, gene:ENSEOMG00000044319
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0005390, CQ.Regalona.r1.4BG0005370 ... CQ.Regalona.r1.6AG0004130, CQ.Regalona.r1.6AG0011130, CQ.Regalona.r1.6BG0004220, CQ.Regalona.r1.6BG0011780
Anacardiaceae	Pistacia vera	3	pistato.v30140260, pistato.v30180260, pistato.v30201500
Apiaceae	Apium graveolens	4	Ag1G01261, Ag3G02069, Ag5G00721, AgUnG00448
Arecaceae	Cocos nucifera	6	COCNU_02G013530, COCNU_08G003720, COCNU_11G001810 ... scaffold001223G000060, scaffold001325G000020, scaffold016239G000050
Arecaceae	Phoenix dactylifera	12	gene-LOC103697793, gene-LOC103698408, gene-LOC103701349 ... gene-LOC103704949, gene-LOC103710674, gene-LOC103712299, gene-LOC103712316, gene-LOC103718705, gene-LOC103719831, gene-LOC120103649, gene-LOC120107860, gene-LOC120111355
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.887.V1.1, AsparagusV1_05.1090.V1.1 ... AsparagusV1_08.2475.V1.1, AsparagusV1_09.644.V1.1, AsparagusV1_09.988.V1.1
Asteraceae	Flaveria trinervia	7	Ftri10G15752, Ftri11G24714, Ftri13G17878, Ftri17G12010 ... Ftri18G09509, Ftri1G28742, Ftri5G02107
Brassicaceae	Arabidopsis thaliana	5	AT1G67800.2, AT1G79380.1, AT3G01650.1, AT5G14420.1 ... AT5G63970.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10004448m.g.v1.0, Thhalv10007950m.g.v1.0 ... Thhalv10013466m.g.v1.0, Thhalv10018670m.g.v1.0, Thhalv10019546m.g.v1.0, Thhalv10020651m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g23240.v2.2, Sp2g27040.v2.2, Sp3g00400.v2.2 ... Sp5g22810.v2.2, Sp5g34430.v2.2, Sp6g29600.v2.2
Brassicaceae	Brassica nigra	11	BniB01g060360.2N, BniB02g048250.2N, BniB03g045190.2N ... BniB04g001640.2N, BniB04g041370.2N, BniB05g024100.2N, BniB06g012210.2N, BniB06g050810.2N, BniB06g067740.2N, BniB07g035210.2N, BniB08g006940.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G1867, Ceq02G1427, Ceq02G1909, Ceq03G1688, Ceq03G1696 ... Ceq06G1698, Ceq07G1336, CeqSG0286
Casuarinaceae	Casuarina glauca	6	Cgl01G2034, Cgl02G1472, Cgl02G1986, Cgl03G1814, Cgl06G1760 ... Cgl07G1408
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05930, gene.Cymno07g10390, gene.Cymno07g12730 ... gene.Cymno08g07180
Dunaliellaceae	Dunaliella salina	3	Dusal.0176s00017.v1.0, Dusal.0176s00019.v1.0 ... Dusal.0176s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate04g23040, gene.Thate04g23070, gene.Thate05g15550 ... gene.Thate07g18210, gene.Thate09g12580, gene.Thate09g19360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10209, nbisL1-mrna-11515, nbisL1-mrna-2016 ... nbisL1-mrna-2273
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2980, evm.TU.LG03.650, evm.TU.LG05.252 ... evm.TU.LG10.983, evm.TU.LG11.78
Plantaginaceae	Plantago ovata	6	Pov_00014184, Pov_00022280, Pov_00024198, Pov_00027824 ... Pov_00033830, Pov_00041507
Plumbaginaceae	Limonium bicolor	4	Lb1G00933, Lb1G07235, Lb3G20769, Lb6G31023
Poaceae	Echinochloa crus-galli	20	AH01.5296, AH02.4247, AH02.4592, AH03.1077, AH06.2261 ... AH08.1922, AH08.253, BH02.4274, BH02.4650, BH03.1242, BH05.3292, BH06.2001, BH08.2013, BH08.238, CH02.4694, CH03.1377, CH05.3398, CH06.2281, CH08.2198, CH08.290
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0043760, gene-QOZ80_1AG0047380 ... gene-QOZ80_1BG0093790, gene-QOZ80_5AG0388180, gene-QOZ80_5BG0436580, gene-QOZ80_6AG0525640, gene-QOZ80_6AG0544700, gene-QOZ80_6BG0479320, gene-QOZ80_6BG0498200, gene-QOZ80_8AG0616480, gene-QOZ80_8AG0635600, gene-QOZ80_8BG0644030, gene-QOZ80_8BG0664410
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.3HG0308290.1, HORVU.MOREX.r3.3HG0323770.1 ... HORVU.MOREX.r3.3HG0323800.1, HORVU.MOREX.r3.5HG0457210.1, HORVU.MOREX.r3.5HG0507280.1, HORVU.MOREX.r3.7HG0677600.1, HORVU.MOREX.r3.7HG0702360.2, HORVU.MOREX.r3.7HG0720740.1, HORVU.MOREX.r3.7HG0720750.1
Poaceae	Lolium multiflorum	9	gene-QYE76_002729, gene-QYE76_006882, gene-QYE76_008368 ... gene-QYE76_018103, gene-QYE76_029803, gene-QYE76_034997, gene-QYE76_035042, gene-QYE76_057242, gene-QYE76_057256
Poaceae	Oryza coarctata	12	Oco01G027840, Oco02G028940, Oco02G031630, Oco11G012470 ... Oco12G012790, Oco15G001510, Oco16G001620, Oco16G010680, Oco17G012000, Oco18G011960, Oco23G005060, Oco24G004610
Poaceae	Oryza sativa	6	LOC_Os01g68060.1, LOC_Os01g73000.1, LOC_Os06g40650.1 ... LOC_Os08g04130.1, LOC_Os08g38600.1, LOC_Os12g19030.1
Poaceae	Paspalum vaginatum	6	gene-BS78_02G129500, gene-BS78_03G374000 ... gene-BS78_03G409500, gene-BS78_07G034200, gene-BS78_07G175900, gene-BS78_10G188100
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0302964, Pt_Chr0400713, Pt_Chr0400722, Pt_Chr0400751 ... Pt_Chr0402524, Pt_Chr0404006, Pt_Chr0600356, Pt_Chr0600401, Pt_Chr0700536, Pt_Chr0700591, Pt_Chr0703444
Poaceae	Sporobolus alterniflorus	19	Chr02G030000, Chr03G022320, Chr03G023760, Chr04G014460 ... Chr05G007730, Chr05G031350, Chr06G022130, Chr08G018010, Chr08G019640, Chr0G005730, Chr0G024530, Chr0G031250, Chr10G005840, Chr10G017840, Chr11G004760, Chr11G013450, Chr20G000340, Chr20G013290, Chr29G003080
Poaceae	Thinopyrum elongatum	7	Tel3E01G658600, Tel3E01G827900, Tel5E01G202200 ... Tel5E01G588400, Tel7E01G423800, Tel7E01G517800, Tel7E01G646000
Poaceae	Triticum dicoccoides	11	gene_TRIDC3AG058880, gene_TRIDC3AG071480 ... gene_TRIDC3BG065980, gene_TRIDC5AG016350, gene_TRIDC5AG053990, gene_TRIDC7AG030450, gene_TRIDC7AG043040, gene_TRIDC7AG053140, gene_TRIDC7BG021300, gene_TRIDC7BG034360, gene_TRIDC7BG045770
Poaceae	Triticum aestivum	22	TraesCS3A02G414400.2, TraesCS3A02G503300.1 ... TraesCS3A02G503400.1, TraesCS3B02G449200.1, TraesCS3B02G566800.1, TraesCS3D02G408900.1, TraesCS3D02G510000.1, TraesCS5A02G103800.2, TraesCS5A02G368900.1, TraesCS5B02G371300.1, TraesCS5D02G122000.1, TraesCS5D02G378400.2, TraesCS7A02G308900.1, TraesCS7A02G381200.1, TraesCS7A02G381300.1, TraesCS7B02G134400.1, TraesCS7B02G208900.1, TraesCS7B02G283100.1, TraesCS7B02G283200.1, TraesCS7D02G305600.1, TraesCS7D02G377500.1, TraesCS7D02G377600.1
Poaceae	Zea mays	7	Zm00001eb133150_P001, Zm00001eb144000_P002 ... Zm00001eb261900_P001, Zm00001eb276190_P001, Zm00001eb362520_P003, Zm00001eb365180_P001, Zm00001eb386670_P001
Poaceae	Zoysia japonica	6	nbis-gene-11061, nbis-gene-12443, nbis-gene-28416 ... nbis-gene-28417, nbis-gene-31869, nbis-gene-41507
Poaceae	Zoysia macrostachya	8	Zma_g11765, Zma_g23573, Zma_g24299, Zma_g25724, Zma_g29867 ... Zma_g32058, Zma_g33055, Zma_g9224
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.1247, evm.TU.LG01.180, evm.TU.LG04.572 ... evm.TU.LG08.1226, evm.TU.LG14.563, evm.TU.LG18.1489, evm.TU.LG20.391, evm.TU.LG22.135
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g07070, gene.Posoc05g01900, gene.Posoc05g01920 ... gene.Posoc05g07920, gene.Posoc05g18850
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_15_RagTag.802, evm.TU.Scaffold_15_RagTag.803 ... evm.TU.Scaffold_17_RagTag.169, evm.TU.Scaffold_3_RagTag.885, evm.TU.Scaffold_5_RagTag.23, evm.TU.Scaffold_6_RagTag.104
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-10381, nbisL1-mrna-1116, nbisL1-mrna-14925 ... nbisL1-mrna-23164, nbisL1-mrna-26989, nbisL1-mrna-27178, nbisL1-mrna-28960, nbisL1-mrna-9282
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-10652, nbisL1-mrna-13703, nbisL1-mrna-14590 ... nbisL1-mrna-5768, nbisL1-mrna-612, nbisL1-mrna-6716
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10733, nbisL1-mrna-14705, nbisL1-mrna-15597 ... nbisL1-mrna-1909, nbisL1-mrna-6559, nbisL1-mrna-94
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.438, evm.TU.utg000006l.15 ... evm.TU.utg000008l.270, evm.TU.utg000011l.74, evm.TU.utg000013l.121, evm.TU.utg000019l.660
Rhizophoraceae	Kandelia obovata	6	Maker00000989, Maker00002493, Maker00006602, Maker00007858 ... Maker00012763, Maker00013265
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-11222, nbisL1-mrna-11901, nbisL1-mrna-14638 ... nbisL1-mrna-5127, nbisL1-mrna-7030, nbisL1-mrna-9330
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-1407, nbisL1-mrna-15923, nbisL1-mrna-17487 ... nbisL1-mrna-17718, nbisL1-mrna-19715, nbisL1-mrna-6852
Salicaceae	Populus euphratica	12	populus_peu01126, populus_peu06673, populus_peu07689 ... populus_peu10484, populus_peu13677, populus_peu20561, populus_peu21742, populus_peu22837, populus_peu26555, populus_peu28740, populus_peu28755, populus_peu30178
Solanaceae	Lycium barbarum	4	gene-LOC132610700, gene-LOC132621135, gene-LOC132632564 ... gene-LOC132640756
Solanaceae	Solanum chilense	4	SOLCI003283800, SOLCI004182100, SOLCI004278600 ... SOLCI004736500
Solanaceae	Solanum pennellii	4	gene-LOC107011625, gene-LOC107015330, gene-LOC107018467 ... gene-LOC107029366
Tamaricaceae	Reaumuria soongarica	4	STRG.22587_chr10_+, STRG.23286_chr05_+, gene_1611 ... gene_18012
Tamaricaceae	Tamarix chinensis	4	TC01G3548, TC02G1385, TC03G1307, TC04G1093
Zosteraceae	Zostera marina	5	Zosma01g34440.v3.1, Zosma04g01220.v3.1, Zosma05g08290.v3.1 ... Zosma05g11130.v3.1, Zosma06g16400.v3.1