Basic Information
Locus ID:
BH05.3232
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 34149066 | 34152350 | + | BH05.3232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 36,749.35 Da | 76.14 | 69.88 | -0.49 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034576259.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Setaria viridis] | 1.91E-46 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 3.11E-37 | |
| TrEMBL | A0A3L6TRU9 | E3 ubiquitin-protein ligase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G05670 PE=4 SV=1 | 1.2E-46 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH01.4715, BH05.3232, CH01.5292, Contig181.137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236660, gene-QOZ80_3BG0291370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406500.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_017444, gene-QYE76_034492, gene-QYE76_070258 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G004950, Oco06G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G454700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G002440, Chr07G008790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G507000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG056420, gene_TRIDC4BG051850 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G404600.1.cds1, TraesCS4B02G304400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb006670_P001, Zm00001eb401490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2674 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1909 |