Basic Information
Locus ID:
BH05.2946
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 27471620 | 27472210 | + | BH05.2946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 20,360.53 Da | 47.32 | 87.25 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 122 | 165 | 5.89137E-17 | - |
| Pfam | PF13639 | Ring finger domain | 122 | 165 | 5.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 171 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 170 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 164 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 165 | 12.504031 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 4.11E-20 |
| RefSeq | XP_025808471.1 | RING-H2 finger protein ATL3-like [Panicum hallii] | 8.53E-85 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 4.01E-19 | |
| TrEMBL | A0A2S3HCX9 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G314000 PE=4 SV=1 | 1.93E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology