Basic Information
Locus ID:
BH05.2945
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 27454513 | 27455127 | + | BH05.2945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 21,251.25 Da | 59.99 | 59.02 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 113 | 156 | 5.02076E-16 | - |
| Pfam | PF13639 | Ring finger domain | 113 | 156 | 1.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 161 | 1.52E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 164 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 114 | 155 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 156 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 83 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 1.28E-16 |
| RefSeq | XP_004962332.1 | RING-H2 finger protein ATL39 [Setaria italica] | 1.64E-70 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 3.75E-17 | |
| TrEMBL | A0A3L6SX01 | RING-H2 finger protein ATL39-like OS=Panicum miliaceum OX=4540 GN=C2845_PM05G22840 PE=4 SV=1 | 4.72E-76 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology