Basic Information
Locus ID:
BH05.2893
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 26729317 | 26735655 | + | BH05.2893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 171,251.77 Da | 46.10 | 73.10 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 4 | 83 | 3.8E-22 | IPR029480 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 568 | 607 | 2.2E-11 | IPR025452 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 799 | 872 | 6.7E-17 | IPR025312 |
| Pfam | PF02992 | Transposase family tnp2 | 204 | 393 | 5.0E-55 | IPR004242 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1317 | 1345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1029 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1470 | 1498 | - | - |
| Coils | Coil | Coil | 1392 | 1412 | - | - |
| Coils | Coil | Coil | 935 | 955 | - | - |
| Coils | Coil | Coil | 1315 | 1335 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052166908.1 | uncharacterized protein LOC127783783 [Oryza glaberrima] | 0 |
| TrEMBL | Q2R316 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g33960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 21 | AH03.846, AH06.2807, AH08.1580, AH09.657, BH01.2974, BH06.72 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0662420 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041727 |
| Poaceae | Oryza coarctata | 6 | Oco04G010980, Oco07G006700, Oco09G013450, Oco10G000820 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os05g36240.1, LOC_Os07g05840.1, LOC_Os11g41770.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205778 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr17G011710, Chr29G008210 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG051480 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-28977, nbis-gene-48363 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10227, Zma_g23699, Zma_g23855, Zma_g32507, Zma_g32508 |