Basic Information
Locus ID:
BH05.2884
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 26628948 | 26635850 | - | BH05.2884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 135,472.38 Da | 67.77 | 76.38 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 989 | 1032 | 7.45803E-10 | - |
| Pfam | PF13639 | Ring finger domain | 988 | 1032 | 6.5E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 985 | 1039 | 1.14E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 978 | 1044 | 4.2E-11 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 985 | 1041 | 0.0029 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 989 | 1032 | 10.984472 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 764 | - | - |
| Coils | Coil | Coil | 622 | 649 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02955.1 | maternal effect embryo arrest 12. | 8.21E-87 |
| RefSeq | XP_039801410.1 | TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Panicum virgatum] | 0 |
| Q5W770 | TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0352700 PE=3 SV=2 | 6.87E-259 | |
| TrEMBL | A0A835A8F1 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_062810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2700 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18242, gene_18243 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003119, Ah014120 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g121580, BVRB_6g153940, BVRB_9g222130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42513, Sbi_jg45144 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27027 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005681 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl35554, Sgl35586, Sgl35587, Sgl35593, Sgl40919, Sgl40920 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002558, gene:ENSEOMG00000012737 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0001130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027330 |
| Apiaceae | Apium graveolens | 4 | Ag10G00071, Ag6G00389, Ag6G00413, Ag6G00415 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G004120, scaffold009484G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706392 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_10.378.V1.1, AsparagusV1_10.379.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G05306 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G02955.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004418m.g.v1.0, Thhalv10027666m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g05500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g001510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0109, Ceq07G1838 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0100, Cgl07G2010 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0050s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g07870, gene.Thate05g04920, gene.Thate07g06160 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005501, Pov_00012842, Pov_00012853, Pov_00019322 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27063 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2866, AH08.587, BH05.2884, BH05.2962, BH09.89, CH09.32 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0327260, gene-QOZ80_4BG0359220 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0062080.1, HORVU.MOREX.r3.6HG0543620.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000925, gene-QYE76_012962, gene-QYE76_019569 |
| Poaceae | Oryza coarctata | 2 | Oco09G007110, Oco10G007380 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G180500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503512 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G022250 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G376600, Tel6E01G090300, Tel6E01G090500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033680, gene_TRIDC1BG039040 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G223100.1, TraesCS1B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb284870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17773, nbis-gene-52464 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27975 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.243, evm.TU.LG12.1459 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15970, gene.Posoc05g12530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.450 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9715 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.688 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2577 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16533 |
| Salicaceae | Populus euphratica | 1 | populus_peu20612 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600708 |
| Solanaceae | Solanum chilense | 2 | SOLCI002775700, SOLCI006502900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004800, gene-LOC107031274 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.3942_chr02_-, gene_13396 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2118 |
| Zosteraceae | Zostera marina | 1 | Zosma01g37930.v3.1 |