Basic Information
Locus ID:
BH05.2772
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 25131586 | 25132494 | + | BH05.2772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 33,034.21 Da | 48.38 | 85.07 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 16 | 211 | 1.6E-38 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 11 | 224 | 8.38E-41 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 172 | 7.8E-36 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 162 | 182 | 3.2E-9 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 68 | 83 | 3.2E-9 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 16 | 29 | 3.2E-9 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002463678.1 | protein synthesis inhibitor II [Sorghum bicolor] | 1.57E-144 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 3.43E-18 | |
| TrEMBL | A0A2T7EEH8 | rRNA N-glycosylase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G291500 PE=3 SV=1 | 5.61E-156 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology