Basic Information
Locus ID:
BH05.2662
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 23974121 | 23978047 | + | BH05.2662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 119,596.54 Da | 59.16 | 66.47 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 867 | 981 | 4.41E-13 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 728 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 658 | - | - |
| Coils | Coil | Coil | 399 | 433 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052134005.1 | uncharacterized protein LOC127752639 [Oryza glaberrima] | 1.82E-107 |
| TrEMBL | Q10M38 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g20820 PE=3 SV=1 | 1.1E-170 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |