Basic Information
Locus ID:
BH05.2653
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 23898204 | 23901105 | + | BH05.2653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 38,123.58 Da | 72.52 | 63.78 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 285 | 325 | 2.09361E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 284 | 330 | 1.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 331 | 1.14E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 335 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 286 | 324 | 0.0019 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 286 | 325 | 11.397556 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 1.22E-88 |
| RefSeq | XP_039838464.1 | probable E3 ubiquitin-protein ligase LUL4 [Panicum virgatum] | 2.71E-168 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 1.18E-87 | |
| TrEMBL | A0A8T0V4E2 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3KG262561 PE=3 SV=1 | 6.12E-167 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology