Basic Information
Locus ID:
BH05.2622
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A K63-linked deubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 23645617 | 23657314 | - | BH05.2622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 245,764.48 Da | 58.74 | 78.14 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 540 | 862 | 3.90834E-63 | - |
| Pfam | PF14551 | MCM N-terminal domain | 1001 | 1075 | 2.2E-6 | IPR027925 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 97 | 153 | 1.1E-10 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 177 | 478 | 2.1E-13 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 540 | 861 | 5.1E-37 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 153 | 3.3E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 176 | 480 | 8.05E-43 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 538 | 863 | 4.71E-73 | IPR038765 |
| Gene3D | G3DSA:3.30.1640.10 | - | 994 | 1081 | 6.7E-5 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 533 | 871 | 1.2E-76 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 169 | 5.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 174 | 493 | 8.5E-49 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 86 | 154 | 13.236876 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 539 | 864 | 43.92281 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 176 | 481 | 29.445745 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 796 | 813 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1799 | 1818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1831 | 1863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1709 | 1750 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 2.08E-25 |
| RefSeq | XP_034600024.1 | uncharacterized protein LOC117860760 isoform X1 [Setaria viridis] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 2.07E-24 | |
| TrEMBL | A0A4U6U0A1 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_6G051400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||