Basic Information
Locus ID:
BH05.2619
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 23610949 | 23618382 | - | BH05.2619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 147,533.88 Da | 45.20 | 81.98 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04723 | HisA_HisF | 47 | 295 | 1.09597E-65 | - |
| CDD | cd09076 | L1-EN | 401 | 616 | 4.90987E-33 | - |
| CDD | cd01650 | RT_nLTR_like | 867 | 1116 | 9.84882E-51 | - |
| Pfam | PF00977 | Histidine biosynthesis protein | 49 | 282 | 1.8E-30 | IPR006062 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 877 | 1114 | 1.1E-38 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 392 | 604 | 3.14E-22 | IPR036691 |
| SUPERFAMILY | SSF51366 | Ribulose-phoshate binding barrel | 47 | 295 | 9.42E-41 | IPR011060 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 828 | 1201 | 1.48E-18 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 911 | 1088 | 1.7E-6 | IPR043128 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 45 | 296 | 4.6E-89 | IPR013785 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 398 | 617 | 5.2E-29 | IPR036691 |
| TIGRFAM | TIGR02129 | hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | 46 | 293 | 7.3E-112 | IPR011858 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 854 | 1116 | 20.826534 | IPR000477 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36230.1 | Aldolase-type TIM barrel family protein. Encodes a BBMII isomerase involved in histidine biosynthesis. | 2.85E-132 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| O82782 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HISN3 PE=1 SV=1 | 2.74E-131 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |