Basic Information
Locus ID:
BH05.2529
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CRNKL1
Description:
HAT (Half-A-TPR) repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 22381230 | 22385553 | + | BH05.2529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 85,979.69 Da | 45.66 | 76.39 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02184 | HAT (Half-A-TPR) repeat | 123 | 150 | 1.0E-5 | IPR003107 |
| Pfam | PF02184 | HAT (Half-A-TPR) repeat | 222 | 250 | 1.0E-8 | IPR003107 |
| Pfam | PF02184 | HAT (Half-A-TPR) repeat | 555 | 583 | 4.6E-5 | IPR003107 |
| SUPERFAMILY | SSF48452 | TPR-like | 209 | 276 | 5.52E-14 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 96 | 211 | 1.52E-24 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 541 | 653 | 3.38E-7 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 285 | 566 | 4.02E-45 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 497 | 691 | 1.2E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 344 | 496 | 2.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 341 | 1.9E-49 | IPR011990 |
| SMART | SM00386 | hat_new_1 | 254 | 289 | 0.0042 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 221 | 252 | 2.9E-6 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 554 | 585 | 0.0013 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 86 | 118 | 7.6 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 188 | 219 | 0.015 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 291 | 325 | 0.025 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 120 | 152 | 2.0E-8 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 413 | 449 | 3.9E-5 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 369 | 403 | 1.7E-6 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 451 | 482 | 80.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 518 | 552 | 0.0021 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 335 | 367 | 250.0 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 484 | 516 | 0.0035 | IPR003107 |
| SMART | SM00386 | hat_new_1 | 154 | 186 | 0.0014 | IPR003107 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41770.1 | crooked neck protein, putative / cell cycle protein, putative. | 5.43E-243 |
| RefSeq | XP_004962076.1 | crooked neck-like protein 1 [Setaria italica] | 0 |
| P63154 | Crooked neck-like protein 1 OS=Mus musculus OX=10090 GN=Crnkl1 PE=1 SV=1 | 5.14E-161 | |
| TrEMBL | A0A835C4L8 | Crooked neck-like protein 1 OS=Digitaria exilis OX=1010633 GN=HU200_024499 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7680 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1778 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004491, Ah014257 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g025720, BVRB_5g099320 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20652, Sbi_jg20653, Sbi_jg20654, Sbi_jg23103 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16967, Seu_jg16968 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009220, GOSA_00009221 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51884, Sgl57179, Sgl63416, Sgl67896 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009166, gene:ENSEOMG00000010973 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0006500, CQ.Regalona.r1.8AG0022770 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150190, pistato.v30186820 |
| Apiaceae | Apium graveolens | 4 | Ag1G01104, Ag8G00598, Ag9G02006, Ag9G02007 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003250 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708791 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1129.V1.1, AsparagusV1_01.2642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G22652, Ftri16G19065 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G13210.1, AT3G51110.1, AT5G41770.1, AT5G45990.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10024572m.g.v1.0, Thhalv10027428m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g12900.v2.2, Sp5g11100.v2.2, Sp6g03340.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g024450.2N, BniB02g070690.2N, BniB04g043860.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0036, Ceq09G1968 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl03G0045, Cgl03G0221, Cgl03G0244, Cgl09G2148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0283s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24710 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2213, evm.TU.LG10.518 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00011747, Pov_00017025, Pov_00017071, Pov_00017072 ... |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05694, Lb2G09230, Lb2G09231, Lb6G31245 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.2433, AH06.1803, BH05.2529, BH06.1671, CH05.2627 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0228580, gene-QOZ80_3BG0274830 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0492710.1, HORVU.MOREX.r3.7HG0719340.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016627, gene-QYE76_034296, gene-QYE76_053720 |
| Poaceae | Oryza coarctata | 5 | Oco07G006390, Oco15G005570, Oco19G002250, Oco20G002350 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os05g22260.1, LOC_Os06g33250.1, LOC_Os10g18150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G229600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400226, Pt_Chr0400238 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G023830, Chr04G013590, Chr07G013010, Chr07G013020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G636100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG045710, gene_TRIDC7AG049060 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5B02G277100.1, TraesCS5D02G284700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb051990_P001, Zm00001eb217360_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12195, nbis-gene-47219 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3475, Zma_g993 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3290, evm.TU.LG16.310 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g13960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.104 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22349, nbisL1-mrna-9386 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4388 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20378 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.430 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014416 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3571 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6741 |
| Salicaceae | Populus euphratica | 6 | populus_peu03655, populus_peu03656, populus_peu03657 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603813, gene-LOC132606039 |
| Solanaceae | Solanum chilense | 1 | SOLCI003387600 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007401, gene-LOC107012936, gene-LOC107013046 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23357_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0610 |
| Zosteraceae | Zostera marina | 1 | Zosma05g16320.v3.1 |