Basic Information
Locus ID:
BH05.2523
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin elongating factor core
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 22351288 | 22355790 | - | BH05.2523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 25,211.38 Da | 21.11 | 84.00 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 132 | 169 | 2.2E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 172 | 1.85E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 184 | 1.9E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 208 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 7.2E-21 |
| RefSeq | XP_025795563.1 | probable ubiquitin conjugation factor E4 isoform X2 [Panicum hallii] | 2.74E-23 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 7.16E-20 | |
| TrEMBL | A0A8T0MS67 | U-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG516100 PE=3 SV=1 | 5.42E-22 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006030 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0318 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... |