Basic Information
Locus ID:
BH05.2507
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 22179540 | 22183057 | - | BH05.2507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.44 | 50,198.62 Da | 59.82 | 64.88 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00034 | Cytochrome c | 370 | 466 | 1.1E-12 | IPR009056 |
| SUPERFAMILY | SSF46626 | Cytochrome c | 366 | 466 | 3.24E-34 | IPR036909 |
| Gene3D | G3DSA:1.10.760.10 | - | 358 | 469 | 3.8E-43 | IPR036909 |
| ProSiteProfiles | PS51007 | Cytochrome c family profile. | 367 | 468 | 15.691958 | IPR009056 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 441 | 451 | 5.5E-33 | IPR002327 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 379 | 386 | 5.5E-33 | IPR002327 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 458 | 466 | 5.5E-33 | IPR002327 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 408 | 418 | 5.5E-33 | IPR002327 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 392 | 407 | 5.5E-33 | IPR002327 |
| PRINTS | PR00604 | Class IA and IB cytochrome C signature | 422 | 438 | 5.5E-33 | IPR002327 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01524 (Platinum drug resistance)
map01524 (Platinum drug resistance)
ko02020 (Two-component system)
map02020 (Two-component system)
map04115 (p53 signaling pathway)
map04210 (Apoptosis)
ko04214 (Apoptosis - fly)
map04214 (Apoptosis - fly)
ko04215 (Apoptosis - multiple species)
map04215 (Apoptosis - multiple species)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10040.1 | cytochrome c-2. Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. | 1.73E-68 |
| RefSeq | XP_002439820.1 | cytochrome c [Sorghum bicolor] | 1.87E-73 |
| A2Y4S9 | Cytochrome c OS=Oryza sativa subsp. indica OX=39946 GN=CC-1 PE=3 SV=1 | 2.15E-71 | |
| TrEMBL | B6SKR4 | Cytochrome c OS=Zea mays OX=4577 PE=2 SV=1 | 1.06E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||