Basic Information
Locus ID:
BH05.2251
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 19819312 | 19837025 | + | BH05.2251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 167,843.66 Da | 51.24 | 84.12 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1131 | 1521 | 1.08211E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1178 | 1523 | 1.6E-78 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 534 | 3.15E-23 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1125 | 1516 | 1.05E-94 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1405 | 1521 | 9.4E-35 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1077 | 1295 | 1.5E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 540 | 1.4E-31 | IPR011989 |
| SMART | SM00119 | hect_3 | 1141 | 1523 | 3.6E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1147 | 1523 | 60.303535 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 827 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_004963722.2 | E3 ubiquitin-protein ligase UPL4 [Setaria italica] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | K3Z348 | HECT-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101770654 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology