Basic Information
Locus ID:
BH05.222
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 1906202 | 1908317 | + | BH05.222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.27 | 52,371.10 Da | 61.16 | 64.41 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 423 | 465 | 2.07892E-15 | - |
| Pfam | PF17123 | RING-like zinc finger | 140 | 160 | 2.4E-6 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 423 | 465 | 7.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 418 | 471 | 4.86E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 160 | 3.53E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 398 | 470 | 5.5E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 163 | 3.6E-5 | IPR013083 |
| SMART | SM00744 | ringv_2 | 423 | 465 | 0.0082 | IPR011016 |
| SMART | SM00184 | ring_2 | 424 | 464 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 424 | 465 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 261 | - | - |
| Coils | Coil | Coil | 55 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 2.93E-13 |
| RefSeq | XP_039840496.1 | E3 ubiquitin-protein ligase MPSR1-like [Panicum virgatum] | 1.94E-23 |
| TrEMBL | A0A1E5W322 | RING-type domain-containing protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007189 PE=4 SV=1 | 5.34E-35 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH05.222.