Basic Information
Locus ID:
BH05.2211
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 19527718 | 19532206 | + | BH05.2211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 67,761.96 Da | 56.36 | 92.06 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 1.2E-12 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 96 | 155 | 1.8E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 371 | 577 | 3.1E-16 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 365 | 583 | 7.13E-31 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 168 | 5.29E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 410 | 492 | 2.3E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 208 | 6.6E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 584 | 2.1E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 291 | 409 | 3.6E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 327 | 582 | 14.068291 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 253 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07150.1 | Leucine-rich repeat protein kinase family protein. | 4.36E-92 |
| RefSeq | XP_004961780.1 | protein MALE DISCOVERER 2 isoform X1 [Setaria italica] | 1.79E-278 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 2.6E-88 | |
| TrEMBL | K3Z4P3 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101756326 PE=4 SV=1 | 4.06E-277 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.2078, BH05.2211, CH05.2292 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0369800, gene-QOZ80_5BG0417380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0071920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014129 |
| Poaceae | Oryza coarctata | 1 | Oco10G011970 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g39410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G173600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504591, Pt_Chr0504607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G018700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G479000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG043980, gene_TRIDC1BG049810 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G296300.2, TraesCS1B02G305200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb290130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14208, nbis-gene-24193 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27025, Zma_g28416 |