Basic Information
Locus ID:
BH05.217
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 1862484 | 1880208 | + | BH05.217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 329,768.13 Da | 49.91 | 76.68 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 206 | 316 | 1.6E-10 | IPR011545 |
| Pfam | PF02992 | Transposase family tnp2 | 880 | 1082 | 9.3E-82 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1266 | 1373 | 3.8E-36 | IPR025452 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 2686 | 2732 | 2.8E-4 | IPR003653 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1526 | 1591 | 4.4E-14 | IPR025312 |
| Pfam | PF13963 | Transposase-associated domain | 568 | 641 | 6.0E-18 | IPR029480 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2601 | 2750 | 1.24E-18 | IPR038765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 201 | 332 | 3.13E-15 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 343 | 9.0E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 2577 | 2756 | 2.1E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2366 | 2387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2341 | 2467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2406 | 2456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1886 | 1919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1886 | 1911 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2342 | 2359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1593 | 1614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2487 | 2516 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28600.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 4.48E-87 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q54CD6 | Probable ATP-dependent RNA helicase ddx5 OS=Dictyostelium discoideum OX=44689 GN=ddx5 PE=3 SV=1 | 1.53E-6 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |