Basic Information
Locus ID:
BH05.2094
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 18331907 | 18338427 | - | BH05.2094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 111,290.01 Da | 49.75 | 77.21 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 853 | 958 | 2.531E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 277 | 615 | 1.05554E-80 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 847 | 948 | 6.1E-14 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 731 | 767 | 1.1E-4 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 290 | 692 | 4.8E-67 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 726 | 768 | 9.15E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 258 | 615 | 2.66E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 1005 | 1.06E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 384 | 476 | 8.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 249 | 333 | 1.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 481 | 631 | 1.2E-29 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 722 | 781 | 7.3E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 632 | 1006 | 1.3E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 865 | 948 | 1.4E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 273 | 592 | 8.3E-25 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 841 | 1001 | 13.73558 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 731 | 770 | 10.881201 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 404 | 577 | 10.73543 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 746 | 755 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 484 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 2.39E-287 |
| RefSeq | XP_025800037.1 | helicase-like transcription factor CHR28 isoform X1 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 2.3E-286 | |
| TrEMBL | A0A2S3H0F1 | Helicase-like transcription factor CHR28 OS=Panicum hallii OX=206008 GN=PAHAL_2G355300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology