Basic Information
Locus ID:
BH05.2092
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 18325229 | 18328232 | + | BH05.2092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 57,001.41 Da | 45.18 | 92.20 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 12 | 293 | 6.92719E-116 | - |
| CDD | cd00051 | EFh | 429 | 496 | 2.48262E-15 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 13 | 294 | 2.8E-61 | IPR000719 |
| Pfam | PF13202 | EF hand | 396 | 412 | 0.019 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 427 | 496 | 6.8E-15 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 308 | 6.88E-79 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 338 | 501 | 3.41E-34 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 15 | 120 | 9.0E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 337 | 505 | 2.6E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 309 | 2.3E-56 | - |
| Gene3D | G3DSA:6.10.140.620 | - | 310 | 335 | 4.1E-5 | - |
| SMART | SM00054 | efh_1 | 392 | 420 | 1.7 | IPR002048 |
| SMART | SM00054 | efh_1 | 470 | 498 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 428 | 456 | 1.7E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 13 | 294 | 6.4E-90 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 466 | 501 | 14.84815 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 424 | 459 | 13.174425 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 294 | 47.707211 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 395 | 423 | 9.324862 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 155 | 167 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 401 | 413 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 43 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 479 | 491 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 437 | 449 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 350 | 369 | 1.2E-9 | - |
| PRINTS | PR00450 | Recoverin family signature | 442 | 460 | 1.2E-9 | - |
| PRINTS | PR00450 | Recoverin family signature | 396 | 417 | 1.2E-9 | - |
| PRINTS | PR00450 | Recoverin family signature | 420 | 439 | 1.2E-9 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23650.1 | calcium-dependent protein kinase 6. Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. | 2.65E-72 |
| RefSeq | XP_021305136.1 | calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform X1 [Sorghum bicolor] | 0 |
| Q6AVM3 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Oryza sativa subsp. japonica OX=39947 GN=CCAMK PE=2 SV=1 | 0 | |
| TrEMBL | K3Z5G9 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Setaria italica OX=4555 GN=SETIT_3G197500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168840 |
| Apiaceae | Apium graveolens | 1 | Ag3G02085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G005670, COCNU_04G005700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709055 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G25598 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1578 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1013 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006959, Pov_00014745 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1968, BH05.2092, CH05.2164 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0368830, gene-QOZ80_5BG0416380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0069960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013966 |
| Poaceae | Oryza coarctata | 2 | Oco09G012740, Oco10G012820 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g41090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G240800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504440, Pt_Chr0504501 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012590, Chr22G005170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G495900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG045650, gene_TRIDC1BG051680 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G307200.1, TraesCS1B02G318000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb200350_P004, Zm00001eb306730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25330 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28476 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1112 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6503 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21100 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017089 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11027, nbisL1-mrna-21129, nbisL1-mrna-21130 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13317 |
| Salicaceae | Populus euphratica | 2 | populus_peu06012, populus_peu19879 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645338 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028598 |