halophFGD

Basic Information

Locus ID: BH05.1954

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: PHD-like zinc-binding domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	17188846	17193514	-	BH05.1954

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.93	106,403.24 Da	53.42	65.33	-0.69

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15571	ePHD	622	700	3.4205E-17	-
CDD	cd17734	BRCT_Bard1_rpt1	748	827	3.38353E-26	-
Pfam	PF13923	Zinc finger, C3HC4 type (RING finger)	15	53	4.6E-9	-
Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	762	820	2.0E-5	IPR001357
Pfam	PF13771	PHD-like zinc-binding domain	622	700	4.1E-9	-
SUPERFAMILY	SSF52113	BRCT domain	796	963	5.96E-13	IPR036420
SUPERFAMILY	SSF57850	RING/U-box	6	77	2.36E-19	-
SUPERFAMILY	SSF52113	BRCT domain	748	845	2.62E-21	IPR036420
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	2	86	3.4E-19	IPR013083
Gene3D	G3DSA:3.40.50.10190	BRCT domain	856	959	1.1E-20	IPR036420
Gene3D	G3DSA:3.40.50.10190	BRCT domain	745	851	7.7E-28	IPR036420
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	578	703	1.7E-22	IPR013083
SMART	SM00184	ring_2	16	53	1.5E-7	IPR001841
SMART	SM00184	ring_2	654	700	11.0	IPR001841
SMART	SM00292	BRCT_7	857	959	6.5E-9	IPR001357
SMART	SM00292	BRCT_7	741	824	3.9E-9	IPR001357
ProSiteProfiles	PS50172	BRCT domain profile.	855	964	14.22984	IPR001357
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	16	54	12.40076	IPR001841
ProSiteProfiles	PS51805	Extended PHD (ePHD) domain profile.	581	701	20.027601	IPR034732
ProSiteProfiles	PS50172	BRCT domain profile.	759	834	11.86514	IPR001357
ProSitePatterns	PS00518	Zinc finger RING-type signature.	31	40	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	358	374	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	250	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	424	446	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	95	447	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	708	735	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	162	191	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	125	153	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	274	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	389	406	-	-

KEGG Pathway

KO Term:

K10683 (BRCA1-associated RING domain protein 1)

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G21070.1	breast cancer susceptibility1. Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	2.51E-180
RefSeq	XP_025804873.1	protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Panicum hallii]	0
Swiss-Prot	Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1	2.42E-179
TrEMBL	A0A3L6SVX9	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Panicum miliaceum OX=4540 GN=C2845_PM05G32690 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg22309, jg35444, jg8668
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14361, gene_5282, gene_5286, gene_651
Amaranthaceae	Atriplex hortensis	2	Ah016382, Ah029205
Amaranthaceae	Beta vulgaris	2	BVRB_7g165610, BVRB_8g187360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1166, Sbi_jg35422, Sbi_jg40566, Sbi_jg50593
Amaranthaceae	Salicornia europaea	2	Seu_jg2150, Seu_jg3548
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00018107, GOSA_00024437
Amaranthaceae	Suaeda glauca	7	Sgl45218, Sgl45235, Sgl50015, Sgl74208, Sgl74211, Sgl77638 ... Sgl77785
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005554, gene:ENSEOMG00000033335 ... gene:ENSEOMG00000034823, gene:ENSEOMG00000042372, gene:ENSEOMG00000046837
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0011830, CQ.Regalona.r1.7BG0013890 ... CQ.Regalona.r1.8AG0010010, CQ.Regalona.r1.8BG0011250
Anacardiaceae	Pistacia vera	2	pistato.v30015990, pistato.v30075910
Apiaceae	Apium graveolens	4	Ag2G01296, Ag2G01298, Ag7G00035, Ag8G00748
Arecaceae	Cocos nucifera	2	COCNU_06G020500, scaffold009984G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103703717, gene-LOC103716250
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.154.V1.1, AsparagusV1_07.1985.V1.1 ... AsparagusV1_07.3449.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G21678, Ftri17G00307, Ftri17G28730, Ftri6G27338 ... FtriNA20742
Brassicaceae	Arabidopsis thaliana	2	AT1G04020.1, AT4G21070.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006912m.g.v1.0, Thhalv10024364m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g02860.v2.2, Sp7g19160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g001490.2N, BniB03g000680.2N, BniB03g022240.2N ... BniB05g015950.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1356
Casuarinaceae	Casuarina glauca	1	Cgl06G1420
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g04530
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate04g00810, gene.Thate04g16490, gene.Thate04g16500 ... gene.Thate06g19340, gene.Thate08g24340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-6366, nbisL1-mrna-9698, nbisL1-mrna-9699
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.1121, evm.TU.LG12.155
Plantaginaceae	Plantago ovata	2	Pov_00024587, Pov_00038530
Plumbaginaceae	Limonium bicolor	2	Lb4G24930, Lb4G26026
Poaceae	Echinochloa crus-galli	8	AH05.1787, AH05.1988, AH09.1535, BH05.1954, BH05.2129 ... BH09.1734, CH05.2021, CH05.2190
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0310980, gene-QOZ80_4BG0342190 ... gene-QOZ80_5AG0367210, gene-QOZ80_5AG0368970, gene-QOZ80_5BG0414820, gene-QOZ80_5BG0416560
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0070230.1, HORVU.MOREX.r3.1HG0078370.1 ... HORVU.MOREX.r3.2HG0118690.1, HORVU.MOREX.r3.2HG0181390.1
Poaceae	Lolium multiflorum	5	gene-QYE76_013937, gene-QYE76_013938, gene-QYE76_014832 ... gene-QYE76_047883, gene-QYE76_049606
Poaceae	Oryza coarctata	5	Oco07G010570, Oco08G010310, Oco09G012620, Oco10G012700 ... Oco10G013910
Poaceae	Oryza sativa	3	LOC_Os04g43300.1, LOC_Os05g40810.1, LOC_Os05g43610.1
Poaceae	Paspalum vaginatum	3	gene-BS78_06G157200, gene-BS78_09G180200 ... gene-BS78_09G198000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0302108, Pt_Chr0302132, Pt_Chr0504246, Pt_Chr0504250 ... Pt_Chr0504460, Pt_Chr0504522
Poaceae	Sporobolus alterniflorus	9	Chr01G017220, Chr12G019500, Chr18G012490, Chr18G013560 ... Chr22G004080, Chr22G005290, Chr23G008930, Chr25G010730, Chr26G010740
Poaceae	Thinopyrum elongatum	4	Tel1E01G493200, Tel1E01G536800, Tel2E01G283000 ... Tel2E01G660100
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG045340, gene_TRIDC1AG048940 ... gene_TRIDC1BG051210, gene_TRIDC1BG051250, gene_TRIDC1BG055610, gene_TRIDC2AG017320, gene_TRIDC2AG055460, gene_TRIDC2BG020890, gene_TRIDC2BG058230, gene_TRIDC4BG030250
Poaceae	Triticum aestivum	14	TraesCS1A02G304700.1, TraesCS1A02G329600.1 ... TraesCS1B02G315000.1, TraesCS1B02G315300.1, TraesCS1B02G343100.2, TraesCS1D02G304000.1, TraesCS1D02G304600.1, TraesCS1D02G331700.1, TraesCS2A02G139100.2, TraesCS2A02G384900.1, TraesCS2B02G163200.1, TraesCS2B02G401900.1, TraesCS2D02G142000.2, TraesCS2D02G381600.1
Poaceae	Zea mays	3	Zm00001eb077450_P001, Zm00001eb245990_P002 ... Zm00001eb292490_P001
Poaceae	Zoysia japonica	4	nbis-gene-14394, nbis-gene-14395, nbis-gene-25341 ... nbis-gene-5250
Poaceae	Zoysia macrostachya	3	Zma_g21605, Zma_g26893, Zma_g28465
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1329, evm.TU.LG01.545, evm.TU.LG03.917 ... evm.TU.LG04.1137, evm.TU.LG04.220, evm.TU.LG05.1678, evm.TU.LG12.816
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01130, gene.Posoc10g05060
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.858, evm.TU.Scaffold_5_RagTag.1128
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11597, nbisL1-mrna-25027
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4874, nbisL1-mrna-6143
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19222
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.396, evm.TU.utg000022l.63
Rhizophoraceae	Kandelia obovata	2	Maker00013168, Maker00016219
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-59, nbisL1-mrna-9896
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10290, nbisL1-mrna-19833
Salicaceae	Populus euphratica	2	populus_peu00932, populus_peu30745
Solanaceae	Lycium barbarum	3	gene-LOC132605718, gene-LOC132610669, gene-LOC132611460
Solanaceae	Solanum chilense	3	SOLCI000661100, SOLCI002722200, SOLCI004840000
Solanaceae	Solanum pennellii	5	gene-LOC107005400, gene-LOC107018841, gene-LOC107022026 ... gene-LOC107028944, gene-LOC107029828
Tamaricaceae	Reaumuria soongarica	2	STRG.253_chr01_-, gene_9697
Tamaricaceae	Tamarix chinensis	2	TC01G0588, TC06G1111
Zosteraceae	Zostera marina	3	Zosma01g38440.v3.1, Zosma03g23680.v3.1, Zosma05g29400.v3.1