Basic Information
Locus ID:
BH05.182
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF3420)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 1635883 | 1638562 | + | BH05.182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 50,185.97 Da | 44.81 | 93.70 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 201 | 231 | 6.3E-7 | IPR024228 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 268 | 349 | 1.5E-11 | IPR020683 |
| Pfam | PF00651 | BTB/POZ domain | 16 | 108 | 1.7E-12 | IPR000210 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 279 | 361 | 3.51E-19 | IPR036770 |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 192 | 3.24E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 195 | 1.1E-23 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 249 | 370 | 6.7E-21 | IPR036770 |
| SMART | SM00225 | BTB_4 | 25 | 162 | 9.0E-18 | IPR000210 |
| SMART | SM00248 | ANK_2a | 284 | 314 | 0.0071 | IPR002110 |
| SMART | SM00248 | ANK_2a | 319 | 348 | 2.7E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 319 | 351 | 11.19366 | IPR002110 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 25 | 109 | 16.90024 | IPR000210 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 319 | 349 | 10.311981 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57130.1 | Ankyrin repeat family protein / BTB/POZ domain-containing protein. Encodes BOP1. Contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves. Along with BOP2, BOP1 is required for nectary development and formation of normal abscission zones.Forms homodimers and heterodimers with BOP2. Nuclear localization is required for activity which includes positive regulation of AS2 in leaves. BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. | 1.84E-187 |
| RefSeq | XP_034606456.1 | BTB/POZ domain and ankyrin repeat-containing protein NH5.2 [Setaria viridis] | 6.4E-302 |
| Q2QXZ2 | BTB/POZ domain and ankyrin repeat-containing protein NH5.2 OS=Oryza sativa subsp. japonica OX=39947 GN=NH5.2 PE=1 SV=1 | 2.47E-285 | |
| TrEMBL | A0A4U6TEV7 | BTB domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G028200v2 PE=4 SV=1 | 1.45E-300 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15851, jg31345, jg33241, jg4277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4606 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022083 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14656, Sbi_jg55411 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25976 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013025, GOSA_00018639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00041, Sgl69066 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013971, gene:ENSEOMG00000029252 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022400, CQ.Regalona.r1.3BG0023090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30188850 |
| Apiaceae | Apium graveolens | 3 | Ag10G02303, Ag2G01526, Ag3G02792 |
| Arecaceae | Cocos nucifera | 6 | COCNU_04G007000, COCNU_12G004620, COCNU_12G004640 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705107, gene-LOC103713409, gene-LOC103714656 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_07.1598.V1.1, AsparagusV1_08.3009.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G12519, Ftri12G23143 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41370.1, AT3G57130.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005948m.g.v1.0, Thhalv10016568m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g23660.v2.2, Sp5g05440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g004140.2N, BniB06g000610.2N, BniB06g056050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0967 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1091, Cgl04G1092 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11530, gene.Cymno05g12520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g30160 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8425 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2531 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006809 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16102 |
| Poaceae | Echinochloa crus-galli | 10 | AH02.4498, AH03.620, AH04.238, AH05.156, BH02.4549, BH04.234 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0046390, gene-QOZ80_1BG0096380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319900.1, HORVU.MOREX.r3.5HG0460940.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003356, gene-QYE76_016529, gene-QYE76_058017 |
| Poaceae | Oryza coarctata | 6 | Oco01G029880, Oco02G031050, Oco21G000750, Oco22G001600 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g72020.1, LOC_Os11g04600.1, LOC_Os12g04410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G400800, gene-BS78_05G039000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207378, Pt_Chr0605935, Pt_Chr0702999, Pt_Chr0703078 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G001120, Chr03G023550, Chr04G021810, Chr05G033550 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G792000, Tel3E01G784900, Tel5E01G238300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG068800, gene_TRIDC3BG078000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G489000.1, TraesCS3B02G537400.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb093200_P001, Zm00001eb141160_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-10842, nbis-gene-25695, nbis-gene-28172 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g11931, Zma_g17544, Zma_g24706, Zma_g25483, Zma_g9373 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.416, evm.TU.LG13.1279, evm.TU.LG15.525 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1651 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8981 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13577 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011871 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13237 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12344 |
| Salicaceae | Populus euphratica | 2 | populus_peu10875, populus_peu26235 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607431, gene-LOC132607461, gene-LOC132615877 |
| Solanaceae | Solanum chilense | 2 | SOLCI002780200, SOLCI003729400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016182, gene-LOC107032228, gene-LOC107032447 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14238_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1901 |
| Zosteraceae | Zostera marina | 2 | Zosma01g39310.v3.1, Zosma02g17520.v3.1 |