Basic Information
Locus ID:
BH05.1751
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 15416513 | 15420157 | - | BH05.1751 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 74,605.18 Da | 49.05 | 89.47 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01862 | Rab7 | 377 | 530 | 1.23014E-106 | - |
| Pfam | PF00071 | Ras family | 377 | 524 | 5.3E-45 | IPR001806 |
| SUPERFAMILY | SSF81383 | F-box domain | 75 | 141 | 6.28E-5 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 377 | 530 | 5.31E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 374 | 541 | 1.2E-53 | IPR027417 |
| SMART | SM00176 | ran_sub_2 | 367 | 578 | 1.5E-4 | - |
| SMART | SM00174 | rho_sub_3 | 375 | 528 | 2.0E-9 | IPR001806 |
| SMART | SM00175 | rab_sub_5 | 377 | 528 | 2.7E-66 | - |
| SMART | SM00173 | ras_sub_4 | 362 | 528 | 1.1E-11 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 377 | 519 | 2.4E-16 | IPR005225 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 345 | 593 | 13.513693 | IPR001806 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 357 | 561 | 25.367712 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 503 | 525 | 5.9E-26 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 465 | 478 | 5.9E-26 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 381 | 397 | 5.9E-26 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 399 | 421 | 5.9E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22740.1 | RAB GTPase homolog G3B. GTP-binding protein Rab7 | 5.2E-85 |
| RefSeq | XP_052160158.1 | uncharacterized protein LOC127777595 [Oryza glaberrima] | 7.07E-110 |
| Q43463 | Ras-related protein Rab7 OS=Glycine max OX=3847 PE=2 SV=1 | 2.78E-88 | |
| TrEMBL | A0A3B6QJ05 | DUF295 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 2.65E-133 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH05.1595, AH05.2825, AH09.1187, BH05.1751, CH04.2131 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0160850 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0616380.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco04G014900 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g18870.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301262, Pt_Chr0306832, Pt_Chr0306837, Pt_Chr0502826 |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G341300.1.cds1, TraesCS6B02G372700.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12384 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25684 |