Basic Information
Locus ID:
BH05.1661
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 14815305 | 14822839 | - | BH05.1661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 138,279.80 Da | 49.40 | 74.57 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 640 | 796 | 4.38567E-26 | - |
| CDD | cd12108 | Hr-like | 41 | 172 | 4.25571E-28 | - |
| CDD | cd12108 | Hr-like | 299 | 427 | 1.40639E-17 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1107 | 1150 | 1.38375E-18 | - |
| Pfam | PF14599 | Zinc-ribbon | 1155 | 1212 | 1.1E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 979 | 1054 | 4.2E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 296 | 429 | 4.6E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 638 | 796 | 9.5E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 44 | 174 | 4.0E-13 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1106 | 1154 | 6.36E-6 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 970 | 1035 | 1.7E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1045 | 1100 | 2.62E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 36 | 192 | 3.6E-33 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 298 | 445 | 1.0E-18 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1179 | 1220 | 1.5E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1101 | 1151 | 1.5E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 636 | 854 | 9.2E-25 | - |
| SMART | SM00184 | ring_2 | 1108 | 1149 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 972 | 1041 | 25.797497 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1044 | 1107 | 29.946346 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1108 | 1149 | 10.851695 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 887 | - | - |
| Coils | Coil | Coil | 305 | 325 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_039799962.1 | zinc finger protein BRUTUS-like [Panicum virgatum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0U9M2 | Zinc finger protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG183192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology