Basic Information
Locus ID:
BH05.1455
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 13038281 | 13038799 | + | BH05.1455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 18,547.88 Da | 33.26 | 94.36 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 100 | 162 | 8.41237E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 99 | 161 | 1.3E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 23 | 85 | 3.2E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 15 | 162 | 4.82E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 90 | 1.7E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 91 | 168 | 4.8E-24 | - |
| SMART | SM00054 | efh_1 | 136 | 164 | 1.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 24 | 52 | 4.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 100 | 128 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 60 | 88 | 0.03 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 96 | 131 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 56 | 91 | 10.468573 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 20 | 55 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 132 | 167 | 13.592857 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 33 | 45 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 145 | 157 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 109 | 121 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 69 | 81 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 6.29E-40 |
| RefSeq | XP_025809538.1 | probable calcium-binding protein CML14 [Panicum hallii] | 1.71E-74 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 1.21E-70 | |
| TrEMBL | A0A1E5UZW8 | Putative calcium-binding protein CML14 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0020649 PE=4 SV=1 | 1.2E-74 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology