Basic Information
Locus ID:
BH05.1403
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CDPK6
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 12461288 | 12465810 | + | BH05.1403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 93,855.39 Da | 56.62 | 70.83 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 396 | 653 | 2.01149E-134 | - |
| CDD | cd00051 | EFh | 702 | 761 | 1.43977E-18 | IPR002048 |
| CDD | cd00051 | EFh | 776 | 834 | 5.09116E-20 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 396 | 654 | 4.4E-74 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 772 | 834 | 1.4E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 702 | 762 | 1.0E-10 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 395 | 663 | 1.62E-85 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 693 | 834 | 4.28E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 680 | 833 | 2.0E-58 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 672 | 763 | 2.0E-58 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 482 | 661 | 2.8E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 398 | 481 | 6.8E-27 | - |
| SMART | SM00054 | efh_1 | 737 | 765 | 0.012 | IPR002048 |
| SMART | SM00054 | efh_1 | 701 | 729 | 7.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 808 | 836 | 1.8E-7 | IPR002048 |
| SMART | SM00220 | serkin_6 | 396 | 654 | 1.9E-101 | IPR000719 |
| SMART | SM00054 | efh_1 | 773 | 801 | 0.0036 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 804 | 839 | 15.154999 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 697 | 732 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 733 | 768 | 11.33333 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 396 | 654 | 48.965134 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 769 | 803 | 12.225983 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 746 | 758 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 817 | 829 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 710 | 722 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 402 | 431 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 516 | 528 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 366 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23650.1 | calcium-dependent protein kinase 6. Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. | 1.69E-246 |
| RefSeq | XP_004961071.1 | calcium-dependent protein kinase 15 [Setaria italica] | 7.84E-291 |
| Q6I587 | Calcium-dependent protein kinase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK15 PE=2 SV=1 | 3.24E-286 | |
| TrEMBL | A0A835F311 | Calcium-dependent protein kinase OS=Digitaria exilis OX=1010633 GN=HU200_019314 PE=4 SV=1 | 4.7E-296 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH05.1403.