Basic Information
Locus ID:
BH05.1378
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 12151789 | 12156030 | - | BH05.1378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 55,487.73 Da | 53.99 | 73.87 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 186 | 5.86E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 52 | 313 | 1.2E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 99 | 139 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 183 | 0.08 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 427 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 3.05E-69 |
| RefSeq | XP_004963506.1 | autophagy-related protein 18d [Setaria italica] | 5.6E-105 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 2.95E-68 | |
| TrEMBL | K3ZDJ7 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101783496 PE=4 SV=1 | 1.27E-103 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology