halophFGD

Basic Information

Locus ID: BH05.1368

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Leucine Rich repeats (2 copies)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	12075491	12078466	+	BH05.1368

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.33	31,398.50 Da	73.31	74.09	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	36	77	4.6E-10	IPR013210
Pfam	PF13855	Leucine rich repeat	105	163	5.2E-11	IPR001611
SUPERFAMILY	SSF52058	L domain-like	37	169	8.5E-29	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	35	180	1.0E-40	IPR032675
PRINTS	PR00019	Leucine-rich repeat signature	150	163	2.5E-6	-
PRINTS	PR00019	Leucine-rich repeat signature	129	142	2.5E-6	-
MobiDBLite	mobidb-lite	consensus disorder prediction	286	301	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	227	301	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	248	272	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	181	209	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G60800.1	NSP-interacting kinase 3.	8.44E-15
RefSeq	XP_034586483.1	protein NSP-INTERACTING KINASE 3-like [Setaria viridis]	2.37E-30
Swiss-Prot	Q93ZS4	Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana OX=3702 GN=NIK3 PE=1 SV=1	8.38E-14
TrEMBL	A0A2T7E8S6	Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G127300 PE=3 SV=1	1.58E-26

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH05.1118, BH05.1368, CH05.1320