Basic Information
Locus ID:
BH05.1347
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PRP38 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 11864499 | 11868630 | - | BH05.1347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 49,968.11 Da | 80.57 | 54.46 | -1.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03371 | PRP38 family | 7 | 162 | 4.4E-48 | IPR005037 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 372 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37370.1 | PRP38 family protein. encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt. | 1.09E-133 |
| RefSeq | XP_025807238.1 | pre-mRNA splicing factor SR-like 1 isoform X1 [Panicum hallii] | 8.82E-215 |
| Q8RWB1 | Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1 | 1.04E-132 | |
| TrEMBL | A0A2T8KI27 | Pre-mRNA-splicing factor 38 OS=Panicum hallii OX=206008 GN=PAHAL_3G138400 PE=3 SV=1 | 1.99E-213 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19981, jg31008 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17439 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012455 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g146300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42470, Sbi_jg45084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27081 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002234 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31811, Sgl83303 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000821, gene:ENSEOMG00000004414 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0009400, CQ.Regalona.r1.6BG0009890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189220 |
| Apiaceae | Apium graveolens | 1 | Ag8G01212 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G002130 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715102 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3316.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G03158 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G37370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027788m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g05100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g030900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0596 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0563 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0135s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g24240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2642 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.37 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031233 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01658, Lb1G04868 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1723, AH05.1144, AH06.196, BH05.1347, BH06.299 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0402810, gene-QOZ80_5BG0451300 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0027190.1, HORVU.MOREX.r3.7HG0648830.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009738, gene-QYE76_010024, gene-QYE76_027809 |
| Poaceae | Oryza coarctata | 4 | Oco09G003540, Oco10G003530, Oco11G002110, Oco12G002050 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g08600.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G069700, gene-BS78_09G070400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402242, Pt_Chr0501629, Pt_Chr0501643 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G011530, Chr0G015130, Chr11G023130, Chr12G025130 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G219000, Tel6E01G282000, Tel7E01G187400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG013600, gene_TRIDC1BG020780 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G118700.1, TraesCS1B02G138200.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb221230_P001, Zm00001eb283000_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18074, nbis-gene-18075, nbis-gene-40384 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27787, Zma_g29090 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1311, evm.TU.LG25.46 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.780 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1181 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17242 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6455 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.738 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5202 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13214 |
| Salicaceae | Populus euphratica | 2 | populus_peu09776, populus_peu24707 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612623 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017867 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21625_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1585 |
| Zosteraceae | Zostera marina | 1 | Zosma04g07110.v3.1 |