Basic Information
Locus ID:
BH05.1237
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 10771012 | 10780321 | - | BH05.1237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 172,719.44 Da | 47.65 | 89.95 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 1483 | 1590 | 1.58858E-4 | - |
| Pfam | PF00069 | Protein kinase domain | 749 | 1026 | 6.5E-36 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 51 | 91 | 5.4E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 203 | 222 | 0.047 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 537 | 575 | 1.0E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 419 | 647 | 3.37E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 744 | 1033 | 4.51E-68 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 100 | 469 | 1.02E-67 | - |
| SUPERFAMILY | SSF50729 | PH domain-like | 1476 | 1592 | 1.11E-11 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 1472 | 1593 | 5.1E-9 | IPR011993 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 51 | 163 | 4.3E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 366 | 655 | 2.1E-83 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 831 | 1035 | 6.6E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 164 | 260 | 4.3E-22 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 734 | 830 | 8.1E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 261 | 365 | 4.1E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 321 | 345 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 369 | 393 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 538 | 562 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 224 | 248 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 320 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 200 | 223 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 514 | 537 | 390.0 | IPR003591 |
| SMART | SM00233 | PH_update | 1481 | 1597 | 4.0E-5 | IPR001849 |
| SMART | SM00220 | serkin_6 | 747 | 1032 | 5.3E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 747 | 1036 | 34.223373 | IPR000719 |
| ProSiteProfiles | PS50003 | PH domain profile. | 1480 | 1595 | 7.5811 | IPR001849 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 877 | 889 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1177 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1390 | 1414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1390 | 1410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1327 | 1364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1327 | 1346 | - | - |
| Coils | Coil | Coil | 1443 | 1477 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 5.28E-119 |
| RefSeq | XP_039799530.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Panicum virgatum] | 5.26E-262 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 5.14E-118 | |
| TrEMBL | A0A8T0TYI7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG177727 PE=3 SV=1 | 1.19E-260 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23562, jg7698 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15146 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003878 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24038, Sbi_jg7886 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010649 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52218, Sgl57490 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004303, gene:ENSEOMG00000023988 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0005760 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005220, COCNU_14G003430 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709541, gene-LOC103714194 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1974.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33548 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G23895.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026064m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g21860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g080860.2N, BniB03g013680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0572 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0680 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g12100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12162 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1544 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028475 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08132, Lb2G13687 |
| Poaceae | Echinochloa crus-galli | 3 | BH05.1237, CH01.2734, CH05.1468 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392410, gene-QOZ80_5BG0438780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0095220.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G018560, Oco10G018520 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g51710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G261300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200596, Pt_Chr0505947 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G016110, Chr06G016850 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G751800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037210, gene_TRIDC1BG074430 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G350700.1, TraesCS1B02G478900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30212 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25903 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3268, evm.TU.LG10.111, evm.TU.LG16.333 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.96 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18307 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8633 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.336 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018472 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10997 |
| Salicaceae | Populus euphratica | 2 | populus_peu03693, populus_peu34541 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132603801, gene-LOC132620383, gene-LOC132634778 |
| Solanaceae | Solanum chilense | 2 | SOLCI002348700, SOLCI006524800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005558, gene-LOC107027896 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23324_chr05_-, gene_9672 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3075, TC06G0102 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05480.v3.1 |