Basic Information
Locus ID:
BH05.1139
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
helix loop helix domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 10024497 | 10028178 | - | BH05.1139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 86,551.96 Da | 48.61 | 86.24 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04873 | ACT_UUR-ACR-like | 161 | 228 | 1.79322E-8 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 71 | 115 | 8.2E-9 | IPR011598 |
| SUPERFAMILY | SSF81383 | F-box domain | 291 | 353 | 5.07E-7 | IPR036047 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 70 | 127 | 9.42E-12 | IPR036638 |
| SUPERFAMILY | SSF52047 | RNI-like | 453 | 727 | 8.44E-5 | - |
| Gene3D | G3DSA:4.10.280.10 | - | 62 | 124 | 1.2E-13 | IPR036638 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 395 | 736 | 2.9E-7 | IPR032675 |
| SMART | SM00353 | finulus | 72 | 121 | 3.3E-10 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 66 | 115 | 14.525703 | IPR011598 |
| ProSiteProfiles | PS51671 | ACT domain profile. | 159 | 239 | 9.476072 | IPR002912 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25710.1 | basic helix-loop-helix 32. Encodes a basic helixloophelix transcription factor that is expressed in the hypophysis-adjacent embryo cells, and is required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation and Pi content. | 2.11E-24 |
| RefSeq | XP_004978282.1 | transcription factor bHLH51 [Setaria italica] | 4.23E-138 |
| Q9LS08 | Transcription factor AIG1 OS=Arabidopsis thaliana OX=3702 GN=BHLH32 PE=1 SV=1 | 2.06E-23 | |
| TrEMBL | A0A835AXN2 | FBD domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_048541 PE=4 SV=1 | 8.36E-161 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.1139, CH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0111130, gene-QOZ80_2BG0159870 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0296530.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G006790, Oco06G006990 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g12190.1, LOC_Os03g12200.1, LOC_Os03g12210.1 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G013590, Chr05G020180, Chr20G002810, Chr24G001980 |