halophFGD

Basic Information

Locus ID: BH05.1136

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Cell division cycle 20.2, cofactor of APC complex-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	10004976	10008124	-	BH05.1136

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.59	56,063.18 Da	66.09	71.13	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	369	441	9.34E-10	IPR036322
Gene3D	G3DSA:2.130.10.10	-	307	494	1.2E-25	IPR015943
SMART	SM00320	WD40_4	382	421	5.6E-4	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	389	430	11.544415	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	52	121	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	66	81	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03363 (cell division cycle 20, cofactor of APC complex)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G33270.1	Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1)	2.9E-49
RefSeq	XP_025824481.1	cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii]	2.58E-86
Swiss-Prot	Q9SZA4	Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1	2.82E-48
TrEMBL	A0A2T7CZF4	ANAPC4_WD40 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G269500 PE=3 SV=1	5.84E-85

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for BH05.1136.