Basic Information
Locus ID:
BH05.1130
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Alfin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 9965388 | 9976700 | - | BH05.1130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 98,782.33 Da | 60.06 | 65.85 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 848 | 898 | 3.1055E-29 | IPR044104 |
| CDD | cd15613 | PHD_AL_plant | 199 | 239 | 3.6267E-23 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 198 | 238 | 1.5E-8 | IPR019787 |
| Pfam | PF12165 | Alfin | 18 | 143 | 1.9E-65 | IPR021998 |
| Pfam | PF12165 | Alfin | 700 | 793 | 1.2E-48 | IPR021998 |
| Pfam | PF00628 | PHD-finger | 849 | 897 | 1.7E-9 | IPR019787 |
| Pfam | PF02469 | Fasciclin domain | 372 | 482 | 8.3E-12 | IPR000782 |
| Pfam | PF12165 | Alfin | 632 | 665 | 1.3E-8 | IPR021998 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 372 | 483 | 9.68E-18 | IPR036378 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 837 | 900 | 8.2E-18 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 200 | 243 | 9.75E-14 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 263 | 294 | 2.43E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 243 | 2.7E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 309 | 2.0E-6 | IPR013083 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 351 | 482 | 1.1E-13 | IPR036378 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 839 | 896 | 8.4E-24 | IPR013083 |
| SMART | SM00249 | PHD_3 | 192 | 237 | 1.4E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 848 | 896 | 3.4E-10 | IPR001965 |
| SMART | SM00554 | fasc_3 | 376 | 483 | 3.4E-19 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 375 | 480 | 9.028021 | IPR000782 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 846 | 898 | 9.285299 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 849 | 895 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 835 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11200.1 | alfin-like 2. AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 4.45E-95 |
| RefSeq | XP_004977116.1 | PHD finger protein ALFIN-LIKE 1 [Setaria italica] | 1.81E-160 |
| A2Y0Q2 | PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1 | 1.06E-138 | |
| TrEMBL | A0A5J9U2H4 | PHD-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_33444 PE=3 SV=1 | 2.44E-160 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for BH05.1130.