Basic Information
Locus ID:
BH05.1129
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the class-I aminoacyl-tRNA synthetase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 9955728 | 9964026 | + | BH05.1129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 112,352.18 Da | 57.30 | 86.24 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00671 | ArgRS_core | 185 | 452 | 7.60254E-70 | IPR035684 |
| Pfam | PF05746 | DALR anticodon binding domain | 903 | 1017 | 8.4E-30 | IPR008909 |
| Pfam | PF00750 | tRNA synthetases class I (R) | 167 | 473 | 1.8E-105 | IPR035684 |
| Pfam | PF03485 | Arginyl tRNA synthetase N terminal domain | 72 | 157 | 2.7E-17 | IPR005148 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 182 | 474 | 1.2E-73 | - |
| SUPERFAMILY | SSF55190 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | 70 | 172 | 4.45E-14 | IPR036695 |
| SUPERFAMILY | SSF47323 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 898 | 1017 | 9.81E-33 | IPR009080 |
| Gene3D | G3DSA:1.10.730.10 | - | 902 | 1018 | 1.7E-35 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 867 | 901 | 4.8E-9 | IPR014729 |
| Gene3D | G3DSA:3.30.1360.70 | - | 66 | 173 | 6.6E-25 | IPR036695 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 180 | 486 | 2.2E-91 | IPR014729 |
| SMART | SM00836 | dalr_1_4 | 903 | 1018 | 1.1E-30 | IPR008909 |
| SMART | SM01016 | Arg_tRNA_synt_N_2 | 71 | 157 | 2.9E-22 | IPR005148 |
| TIGRFAM | TIGR00456 | argS: arginine--tRNA ligase | 90 | 476 | 4.8E-83 | IPR001278 |
| ProSitePatterns | PS00178 | Aminoacyl-transfer RNA synthetases class-I signature. | 193 | 204 | - | IPR001412 |
| PRINTS | PR01038 | Arginyl-tRNA synthetase signature | 224 | 237 | 1.7E-26 | IPR001278 |
| PRINTS | PR01038 | Arginyl-tRNA synthetase signature | 200 | 216 | 1.7E-26 | IPR001278 |
| PRINTS | PR01038 | Arginyl-tRNA synthetase signature | 185 | 200 | 1.7E-26 | IPR001278 |
| PRINTS | PR01038 | Arginyl-tRNA synthetase signature | 367 | 388 | 1.7E-26 | IPR001278 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 519 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26300.4 | - | 3.45E-247 |
| RefSeq | XP_025805473.1 | arginine--tRNA ligase, cytoplasmic-like [Panicum hallii] | 0 |
| O23247 | Arginine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB1027 PE=1 SV=1 | 2.1E-245 | |
| TrEMBL | A0A2S3H8Q1 | arginine--tRNA ligase OS=Panicum hallii OX=206008 GN=PAHAL_3G131200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||