Basic Information
Locus ID:
BH05.1082
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Copine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 9376161 | 9376518 | + | BH05.1082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 6,191.92 Da | 46.88 | 132.41 | 0.35 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 3.84E-8 |
| RefSeq | XP_015650866.1 | E3 ubiquitin-protein ligase RGLG4 [Oryza sativa Japonica Group] | 1.01E-9 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 3.82E-7 | |
| TrEMBL | A0A8T0IGI8 | VWFA domain-containing protein OS=Ceratodon purpureus OX=3225 GN=KC19_3G021400 PE=4 SV=1 | 1.67E-8 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0019220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181380 |
| Apiaceae | Apium graveolens | 1 | Ag1G01708 |
| Brassicaceae | Brassica nigra | 1 | BniB02g005730.2N |
| Poaceae | Echinochloa crus-galli | 5 | BH05.1082, BH05.3381, BH06.1739, BH08.1774, BH08.2339 |
| Poaceae | Zea mays | 1 | Zm00001eb354350_P001 |